Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52772963_52775068_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

52772963 - 52775068

Intron Length:

2106

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTT|GTGAGTTTA

5'SS Class:

major

3'SS Sequence:

TCCTGACATAAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TATTTCCCAATG

Flanking Amino Acid:

EDLEPRCNNSSLKIEELQEA

Intron Amino Acid Position:

518

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

74.9

30.5

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

57.6

0.17

1.1

56.4

37.4

Minor 5ss

40.9

-1

43.6

Minor BPS

49.6

-0.1

1.9

61.37

40.6

Associated Gene:

Gene:

HOOK3

Ensembl Gene ID:

ENSAPLG00000013045

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036728

52765818 - 52813948

48131

ENSAPLT00000013658

52759619 - 52813948

54330