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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52776013_52781239_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52776013 - 52781239
Intron Length:
5227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ACACATTTAACT
Flanking Amino Acid:
LQDQGSKAEDSILLKKKLEE
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
85.3
0.79
0.8
84.6
30.3
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
58.7
0.35
1.5
69.84
40.7

Associated Gene:

Gene:
HOOK3
Ensembl Gene ID:
ENSAPLG00000013045
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036728
52765818 - 52813948
48131
ENSAPLT00000013658
52759619 - 52813948
54330