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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52781328_52783349_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52781328 - 52783349
Intron Length:
2022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
ATCTATTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GTTTTCTGAAAA
Flanking Amino Acid:
LRKNELETENRLVNQRLLVV
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
73.3
0.52
0.9
65.8
40
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
64.5
0.45
1.5
74.4
36.4

Associated Gene:

Gene:
HOOK3
Ensembl Gene ID:
ENSAPLG00000013045
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036728
52765818 - 52813948
48131
ENSAPLT00000013658
52759619 - 52813948
54330