Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52785825_52788683_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52785825 - 52788683

Intron Length:

2859

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TCCAATTATTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TTTCCAATTATT

Flanking Amino Acid:

KVDSLQKEKDRLRTERDSLK

Intron Amino Acid Position:

350

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

33.2

Major BPS

88.7

0.96

0.8

36.5

Major PPT

72.3

0.5

69.3

40.5

Minor 5ss

36.4

-1.5

3.2

49.6

39.8

Minor BPS

47.9

-0

2.1

76.24

39.7

Associated Gene:

Gene:

HOOK3

Ensembl Gene ID:

ENSAPLG00000013045

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036728

52765818 - 52813948

48131

ENSAPLT00000013658

52759619 - 52813948

54330