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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52788795_52792184_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52788795 - 52792184

Intron Length:

3390

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

CTTGTTCTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

AAATTATTAATT

Flanking Amino Acid:

RSQLETYKRQAVELQNRLSE

Intron Amino Acid Position:

313

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.8

82.1

24.6

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

81.5

0.71

0.8

75.8

32.8

Minor 5ss

27.3

-2.6

2.7

30.6

42.8

Minor BPS

61.5

0.44

1.5

73.6

36.8

Associated Gene:

Gene:

HOOK3

Ensembl Gene ID:

ENSAPLG00000013045

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036728

52765818 - 52813948

48131

ENSAPLT00000013658

52759619 - 52813948

54330