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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52795675_52796269_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52795675 - 52796269
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAGAG
5'SS Class:
major
3'SS Sequence:
TTCATTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTTCTCAAGC
Flanking Amino Acid:
QLEQLQEETFRLEAAKDDYR
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
59.3
40
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
85.3
0.79
0.8
80
32
Minor 5ss
27.7
-2.6
3.6
37
47.6
Minor BPS
58.4
0.24
1.9
71
40.3

Associated Gene:

Gene:
HOOK3
Ensembl Gene ID:
ENSAPLG00000013045
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036728
52765818 - 52813948
48131
ENSAPLT00000013658
52759619 - 52813948
54330