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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52806151_52808291_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52806151 - 52808291
Intron Length:
2141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCAT
5'SS Class:
major
3'SS Sequence:
TGTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAACAT
U12 Branch Point Sequence:
CATTCCAGAATG
Flanking Amino Acid:
GCAVNCEQKQEYIQTIMMME
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
72.5
38.4
Major BPS
53.2
0.08
1.3
63.4
42.8
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
42
-0.9
2.8
58.7
45.8
Minor BPS
50.4
-0.1
1.8
58.63
42.9

Associated Gene:

Gene:
HOOK3
Ensembl Gene ID:
ENSAPLG00000013045
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013658
52759619 - 52813948
54330
ENSAPLT00000036728
52765818 - 52813948
48131