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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52842266_52842343_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52842266 - 52842343
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTATGGAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTATCA
Flanking Amino Acid:
MFGGPVGSIFLKDVPQALLT
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.1
64.6
40.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
91.8
0.94
0.7
93.4
22.6
Minor 5ss
42.9
-0.8
3.2
66.5
44.6
Minor BPS
71.9
0.68
1.5
82.41
32.7

Associated Gene:

Gene:
RNF170
Ensembl Gene ID:
ENSAPLG00000013014
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048473
52841909 - 52865474
23566