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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52852423_52853855_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
52852423 - 52853855
Intron Length:
1433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACTTAAT
5'SS Class:
major
3'SS Sequence:
TTTTACATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTCTTTTTACAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
72.7
38
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
81.2
0.7
0.8
79.1
33.8
Minor 5ss
36.5
-1.5
3
48
42.8
Minor BPS
57.9
0.33
1.7
75.95
41.3

Associated Gene:

Gene:
RNF170
Ensembl Gene ID:
ENSAPLG00000013014
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013546
52852352 - 52865474
13123