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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52854000_52858482_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52854000 - 52858482
Intron Length:
4483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACTG
Flanking Amino Acid:
FIAALVYTLLRNEHQNIHPE
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
89.4
0.89
0.6
84
24.1
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
68.5
0.44
1.6
74.4
38.6

Associated Gene:

Gene:
RNF170
Ensembl Gene ID:
ENSAPLG00000013014
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013546
52852352 - 52865474
13123
ENSAPLT00000048473
52841909 - 52865474
23566
ENSAPLT00000037763
52841364 - 52865474
24111