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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52859775_52860779_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52859775 - 52860779
Intron Length:
1005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
ACGTCTGTGACT
Flanking Amino Acid:
IETNCGHLFCGSCIIAYWRY
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.4
37.3
Major BPS
74.1
0.6
1
69
38.9
Major PPT
83.1
0.75
1
84.6
36
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
50.4
0.09
2
68.38
43.3

Associated Gene:

Gene:
RNF170
Ensembl Gene ID:
ENSAPLG00000013014
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013546
52852352 - 52865474
13123
ENSAPLT00000048473
52841909 - 52865474
23566
ENSAPLT00000037763
52841364 - 52865474
24111