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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52917413_52917488_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
52917413 - 52917488
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAAGATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
88.9
0.88
0.7
81.2
36.5
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
46.5
-0.1
2.1
75.42
41

Associated Gene:

Gene:
CHRNB3
Ensembl Gene ID:
ENSAPLG00000012846
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046873
52917033 - 52924458
7426