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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52917882_52919170_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52917882 - 52919170
Intron Length:
1289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGAAAG
5'SS Class:
major
3'SS Sequence:
CTCTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAA
U12 Branch Point Sequence:
GTCTCCAAGATG
Flanking Amino Acid:
MHGGVSAFISVAE
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
68.1
38.7
Major BPS
55.5
0.14
1.3
66.7
39.7
Major PPT
87.7
0.85
0.7
80.3
31.8
Minor 5ss
27.9
-2.5
2.8
32.3
42
Minor BPS
45.4
-0.5
2
51.87
43.1

Associated Gene:

Gene:
CHRNB3
Ensembl Gene ID:
ENSAPLG00000012846
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046873
52917033 - 52924458
7426