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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52919323_52919894_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52919323 - 52919894
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTGCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TCCTCTCTACCT
Flanking Amino Acid:
GLKISQLVDVDEKNQLMTTN
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
84
0.85
0.9
75
39.9
Major PPT
69.4
0.44
0.9
61.8
40
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
51.2
0.11
2
71.75
45.6

Associated Gene:

Gene:
CHRNB3
Ensembl Gene ID:
ENSAPLG00000012846
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046873
52917033 - 52924458
7426
ENSAPLT00000034166
52917033 - 52924458
7426
ENSAPLT00000013397
52917295 - 52925499
8205