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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52919940_52923125_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52919940 - 52923125
Intron Length:
3186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGGCAG
U12 Branch Point Sequence:
TCTTCTGTCTCC
Flanking Amino Acid:
LMTTNVWLKQEWIDHKLSWN
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
71.2
40.6
Major BPS
38.5
-0.7
1.7
42.8
49.4
Major PPT
83.4
0.75
0.8
77.3
31.4
Minor 5ss
32.9
-1.9
3
40.4
45.7
Minor BPS
35.8
-1
3.7
61.09
45

Associated Gene:

Gene:
CHRNB3
Ensembl Gene ID:
ENSAPLG00000012846
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034166
52917033 - 52924458
7426
ENSAPLT00000013397
52917295 - 52925499
8205
ENSAPLT00000046873
52917033 - 52924458
7426