About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52934460_52934580_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52934460 - 52934580
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGATGA
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCCTCATTT
Flanking Amino Acid:
IWKPDIVLYNNAVGDFQVEG
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
64.1
36.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
84.7
0.78
0.8
77.7
36.7
Minor 5ss
45.1
-0.5
2.8
55.6
43.2
Minor BPS
68.1
0.65
1.8
88.32
37.1

Associated Gene:

Gene:
CHRNA6
Ensembl Gene ID:
ENSAPLG00000012469
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013009
52930162 - 52939358
9197