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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52934691_52935771_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52934691 - 52935771
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGGTTTTAAAAT
Flanking Amino Acid:
IMETNLWLRHIWNDYKLRWD
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.2
81.4
32.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.6
0.89
0.6
89.2
19.8
Minor 5ss
35.7
-1.6
3.3
48.3
41.3
Minor BPS
48.8
-0
1.7
63.47
41.1

Associated Gene:

Gene:
CHRNA6
Ensembl Gene ID:
ENSAPLG00000012469
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013009
52930162 - 52939358
9197