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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52937687_52939279_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52937687 - 52939279
Intron Length:
1593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTGT
5'SS Class:
major
3'SS Sequence:
TTTATGAACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTTATGAACC
Flanking Amino Acid:
WAFMVTSLIKDTAACESEER
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.7
43.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
68
0.41
1
59.5
45.1
Minor 5ss
44.2
-0.6
3.2
64.5
46.9
Minor BPS
59.7
0.28
1.7
72.09
38.8

Associated Gene:

Gene:
CHRNA6
Ensembl Gene ID:
ENSAPLG00000012469
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013009
52930162 - 52939358
9197