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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52990784_52991361_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52990784 - 52991361
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
GCTTGGACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTGCTTGGACT
Flanking Amino Acid:
DFDNVTMTVEGFLNYYDACS
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
68.3
0.41
1
62.7
43.1
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
58.5
0.35
1.6
75.29
42

Associated Gene:

Gene:
IDUA
Ensembl Gene ID:
ENSAPLG00000012152
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012690
52955479 - 53000505
45027