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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52995487_52996521_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52995487 - 52996521
Intron Length:
1035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGAATCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGTCTTTGAATC
Flanking Amino Acid:
EQFQQIRDAEDPVATGPFAF
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
67
38.3
Major BPS
80
0.75
1
78.6
31
Major PPT
73.1
0.52
0.9
65.9
39.7
Minor 5ss
38.3
-1.3
3
48.9
46.8
Minor BPS
56.5
0.18
1.4
64.98
34.3

Associated Gene:

Gene:
IDUA
Ensembl Gene ID:
ENSAPLG00000012152
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012690
52955479 - 53000505
45027