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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_52997336_52998100_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52997336 - 52998100
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TTGTGTTTACCA
Flanking Amino Acid:
VLWDDGCVNSKCIKTFEVQF
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
77.6
32.3
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
35.7
-1.6
3.2
45.3
36.6
Minor BPS
54.7
0.14
2
70.38
42.6

Associated Gene:

Gene:
IDUA
Ensembl Gene ID:
ENSAPLG00000012152
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012690
52955479 - 53000505
45027