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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53007519_53008982_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53007519 - 53008982
Intron Length:
1464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCTTT
5'SS Class:
major
3'SS Sequence:
AATCTCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
TTTGCCTTCATT
Flanking Amino Acid:
ASSKGRVKLFGFWVICADMA
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.8
38.1
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
73.4
0.53
1
66.1
39.9
Minor 5ss
43.9
-0.7
3.1
56.2
48
Minor BPS
68.9
0.68
1.8
87.41
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011994
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012490
53006816 - 53010526
3711