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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53009120_53010409_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53009120 - 53010409
Intron Length:
1290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATTTTG
5'SS Class:
major
3'SS Sequence:
CCTTCCACATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
ATAGTAATAACC
Flanking Amino Acid:
AVKDNFDPKRYAGKWYALAK
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
71.6
40.9
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
65.5
0.35
0.9
64.2
30.9
Minor 5ss
43.4
-0.7
2.8
50.1
46.2
Minor BPS
46.7
-0.2
1.9
59.62
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011994
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012490
53006816 - 53010526
3711