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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53027115_53029567_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53027115 - 53029567
Intron Length:
2453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
AAATGCTTAATT
Flanking Amino Acid:
KTMNIKDVSECAQFSPFVDE
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
71.2
0.48
1
68.2
36.2
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
64.7
0.54
1.7
76.62
39.9

Associated Gene:

Gene:
PDE6B
Ensembl Gene ID:
ENSAPLG00000010965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011489
53026704 - 53047521
20818