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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53029721_53030061_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53029721 - 53030061
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TTTGCCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTGCCTTTACA
Flanking Amino Acid:
GPHFTSSDETLFLKYLNFAS
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
70.3
40.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
86.3
0.82
0.8
80.2
31.9
Minor 5ss
36.6
-1.5
3.4
54.8
43.5
Minor BPS
72.6
0.71
1.7
83.52
37

Associated Gene:

Gene:
PDE6B
Ensembl Gene ID:
ENSAPLG00000010965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011489
53026704 - 53047521
20818