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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53030152_53032380_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53030152 - 53032380
Intron Length:
2229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
CTATGCTTACAT
Flanking Amino Acid:
LHNCETRRGQVLLWSANKVF
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
69
41.8
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
87
0.83
0.7
81.7
30.4
Minor 5ss
32.3
-2
3
40
45.5
Minor BPS
48.8
-0
2.1
69.74
46.7

Associated Gene:

Gene:
PDE6B
Ensembl Gene ID:
ENSAPLG00000010965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011489
53026704 - 53047521
20818