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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53032522_53033574_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
53032522 - 53033574
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATCTGAAACACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCATCTGAAAC
Flanking Amino Acid:
VGLLDMTKQKEFFDLWPVLL
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
59.4
0.21
1
51.7
40.5
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
54.3
0.11
1.6
65.06
40.1

Associated Gene:

Gene:
PDE6B
Ensembl Gene ID:
ENSAPLG00000010965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011489
53026704 - 53047521
20818