About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53035371_53035538_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53035371 - 53035538
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TGCAATCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTGCAATC
Flanking Amino Acid:
LPTYVAESGFICNIMNAAAD
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
65.1
0.34
0.9
55.2
41
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
54.2
0.11
2.2
74.09
37.4

Associated Gene:

Gene:
PDE6B
Ensembl Gene ID:
ENSAPLG00000010965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011489
53026704 - 53047521
20818