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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53035918_53036875_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53035918 - 53036875
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGTTC
5'SS Class:
major
3'SS Sequence:
TCTTCTCTCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TGTTCCTCATTT
Flanking Amino Acid:
FDEQDETLMESLTQFLGWSV
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
68.9
36.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
72.5
0.51
1
71.4
33.4
Minor 5ss
46.7
-0.3
3.2
66.9
44.7
Minor BPS
62.2
0.46
1.8
81.22
40.6

Associated Gene:

Gene:
PDE6B
Ensembl Gene ID:
ENSAPLG00000010965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011489
53026704 - 53047521
20818