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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53038430_53039472_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53038430 - 53039472
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCCAATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TCTCTCCCAATT
Flanking Amino Acid:
VVKKFQIPQEVLVRFVYSVS
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
75.8
0.58
0.9
68.9
35.7
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
48.8
-0
1.9
70
41.2

Associated Gene:

Gene:
PDE6B
Ensembl Gene ID:
ENSAPLG00000010965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011489
53026704 - 53047521
20818