Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53042439_53043813_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53042439 - 53043813

Intron Length:

1375

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTCGG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCCTCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACACAG

U12 Branch Point Sequence:

TTTCCCTCAAAG

Flanking Amino Acid:

IIATDLALYFKKRTMFQKIV

Intron Amino Acid Position:

655

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

66.4

45.1

Major BPS

44.9

-0.3

1.4

52.7

34.2

Major PPT

74.2

0.55

75.1

27.5

Minor 5ss

35.3

-1.7

2.9

41.6

38.9

Minor BPS

62.7

0.26

1.8

71.14

41.1

Associated Gene:

Gene:

PDE6B

Ensembl Gene ID:

ENSAPLG00000010965

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011489

53026704 - 53047521

20818