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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53044371_53045163_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53044371 - 53045163
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGGTGC
5'SS Class:
major
3'SS Sequence:
CTCGTCAATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CAGTCCTAACTT
Flanking Amino Acid:
ITKPWEVQSKVALLVAAEFW
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.3
64.8
42.3
Major BPS
72
0.55
1
71.8
31.4
Major PPT
64.9
0.33
0.9
59.3
35.9
Minor 5ss
32.5
-2
3.2
42
44.8
Minor BPS
48.8
-0
2
64.22
46.6

Associated Gene:

Gene:
PDE6B
Ensembl Gene ID:
ENSAPLG00000010965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011489
53026704 - 53047521
20818