Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53060515_53062288_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53060515 - 53062288

Intron Length:

1774

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTCCATAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

CTAAATTTAACC

Flanking Amino Acid:

AIFSFVFIPLSYVLLGLVIV

Intron Amino Acid Position:

214

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.2

29.3

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

80.9

0.69

0.7

76.9

25.3

Minor 5ss

-0.8

2.8

56.6

41.9

Minor BPS

58.1

0.23

1.6

64.92

40.4

Associated Gene:

Gene:

TMEM175

Ensembl Gene ID:

ENSAPLG00000010828

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018657

53056277 - 53070090

13814

ENSAPLT00000011280

53057270 - 53069846

12577