Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53064500_53066167_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53064500 - 53066167

Intron Length:

1668

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTTCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCAAT

U12 Branch Point Sequence:

AGTGTTTCAATA

Flanking Amino Acid:

IDDVLALLNLACMMIITFLP

Intron Amino Acid Position:

119

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

79.6

35.4

Major BPS

76.9

0.67

1.2

31.9

Major PPT

87.8

0.85

0.6

88.4

21.1

Minor 5ss

34.9

-1.7

3.1

47.1

42.6

Minor BPS

49.1

-0

1.5

57.82

36.2

Associated Gene:

Gene:

TMEM175

Ensembl Gene ID:

ENSAPLG00000010828

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011280

53057270 - 53069846

12577

ENSAPLT00000018657

53056277 - 53070090

13814