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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53069518_53069681_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53069518 - 53069681
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TGTGTACTAACT
Flanking Amino Acid:
ALLSIIATVMILPVAHTKIH
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
58.5
40.7
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
33.8
-1.8
3
40.2
39.7
Minor BPS
49.5
0.04
2
74.4
42

Associated Gene:

Gene:
TMEM175
Ensembl Gene ID:
ENSAPLG00000010828
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011280
53057270 - 53069846
12577