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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53083801_53084443_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53083801 - 53084443
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
CTTTCCAAAACT
Flanking Amino Acid:
KRIGYDDSSKGLDYKTCTVL
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
70.2
0.45
0.8
70.2
29.2
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
62.9
0.48
2
84.77
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010288
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010745
53075053 - 53094558
19506