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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53084557_53085301_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53084557 - 53085301
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGGA
5'SS Class:
major
3'SS Sequence:
TTTTTCAATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTTTTCAATA
Flanking Amino Acid:
SDDDLGAGDQGLMFGYATDE
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
65.9
39.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.3
0.75
0.9
79
33.2
Minor 5ss
28.7
-2.4
3.5
38.6
46.4
Minor BPS
62.9
0.4
1.5
71.65
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010288
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010745
53075053 - 53094558
19506