About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53087016_53088579_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53087016 - 53088579
Intron Length:
1564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATGAATA
Flanking Amino Acid:
SEKFVEGGPKSDAGLTGRKI
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.5
40
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
80.5
0.69
0.9
74
36.8
Minor 5ss
43.2
-0.7
3.1
58.8
46.1
Minor BPS
56.9
0.21
1.7
68.02
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010288
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010745
53075053 - 53094558
19506