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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53088763_53091584_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53088763 - 53091584
Intron Length:
2822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
GTGTCTTCCACA
Flanking Amino Acid:
AGLCKRVLIQLSYAIGLSHP
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
74.7
0.56
0.9
68.7
37.3
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
49.5
-0
2
64.03
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010288
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010745
53075053 - 53094558
19506