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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53091723_53094459_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
53091723 - 53094459
Intron Length:
2737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGTGCTAT
5'SS Class:
weak_major
3'SS Sequence:
TTCATTCAGGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATT
Flanking Amino Acid:
DLRLGAIIRFLDLKRPIYQK
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.1
0.21
1.1
58.4
36.6
Major BPS
100
1.24
0.5
100
0
Major PPT
48.7
-0
1.8
58.4
42.1
Minor 5ss
48.7
-0.1
2.8
69.3
42.9
Minor BPS
59.7
0.39
1.7
80.3
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010288
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010745
53075053 - 53094558
19506