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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53113831_53116480_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53113831 - 53116480
Intron Length:
2650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTTAC
5'SS Class:
major
3'SS Sequence:
CCTCTTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATGTCTTCAATT
Flanking Amino Acid:
KPPIIHRDLKVENLLISNQG
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.3
71
35.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
76.4
0.59
1
77.9
28.1
Minor 5ss
42
-0.9
2.6
52.5
44.7
Minor BPS
65.9
0.58
1.5
78.35
38.5

Associated Gene:

Gene:
GAK
Ensembl Gene ID:
ENSAPLG00000009451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009893
53098780 - 53166800
68021