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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53116607_53117350_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53116607 - 53117350
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACTA
5'SS Class:
strong_major
3'SS Sequence:
CTATCTTCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTCTAT
U12 Branch Point Sequence:
TCTGCTTCAAGA
Flanking Amino Acid:
AQKRALVEEEITRNTTPMYR
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
76.9
33.7
Major BPS
65
0.37
1.3
64.5
42.5
Major PPT
77.8
0.63
0.8
73
31.5
Minor 5ss
30.1
-2.3
3.1
38.6
46.4
Minor BPS
49.3
-0
1.9
62.68
44.2

Associated Gene:

Gene:
GAK
Ensembl Gene ID:
ENSAPLG00000009451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009893
53098780 - 53166800
68021