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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53125201_53125839_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53125201 - 53125839
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
CATGTTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATTGCCTGAATC
Flanking Amino Acid:
TRYSVFHDLISSSLKVNPEE
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
78.2
32.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
74.7
0.56
0.8
73.1
36.9
Minor 5ss
46
-0.4
2.8
63.8
41.6
Minor BPS
65.9
0.48
1.5
73.7
37.2

Associated Gene:

Gene:
GAK
Ensembl Gene ID:
ENSAPLG00000009451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009893
53098780 - 53166800
68021