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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53126634_53128662_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53126634 - 53128662
Intron Length:
2029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGCA
5'SS Class:
major
3'SS Sequence:
TTGACTACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
TTCTGTTTGACT
Flanking Amino Acid:
AGQLNNMYNAGLTVAECDQT
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
69.6
34.6
Major BPS
69
0.47
1
69.9
32.6
Major PPT
68.7
0.42
0.9
60
41.4
Minor 5ss
39.1
-1.2
3
50.7
45.7
Minor BPS
65
0.55
1.8
82.51
39.6

Associated Gene:

Gene:
GAK
Ensembl Gene ID:
ENSAPLG00000009451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009893
53098780 - 53166800
68021