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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53136206_53136291_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53136206 - 53136291
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
AAGTATTCACTT
Flanking Amino Acid:
DISYITSRIAVMSFPAEGVE
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
79.5
29.5
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
90
0.9
0.7
88.2
29.1
Minor 5ss
47.6
-0.2
2.8
64.6
46.8
Minor BPS
43.5
-0.4
1.8
56.47
40.3

Associated Gene:

Gene:
GAK
Ensembl Gene ID:
ENSAPLG00000009451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009893
53098780 - 53166800
68021