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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53136441_53139700_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53136441 - 53139700
Intron Length:
3260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGTGTATA
5'SS Class:
major
3'SS Sequence:
TCTCTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTGTTTGTCACT
Flanking Amino Acid:
TYRPSRFHNRVSECGWPARR
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
75.8
35.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
84.1
0.77
0.8
81.5
28.8
Minor 5ss
39.5
-1.2
2.7
42.1
44.8
Minor BPS
48
-0
2.4
74.34
43.4

Associated Gene:

Gene:
GAK
Ensembl Gene ID:
ENSAPLG00000009451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009893
53098780 - 53166800
68021