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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53144029_53147924_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53144029 - 53147924
Intron Length:
3896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTTTCCAACA
Flanking Amino Acid:
STLGGRLQAKMASMKMFQIQ
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.1
0.63
0.9
74.4
35.3
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
50.4
0.01
1.8
67.64
39.1

Associated Gene:

Gene:
GAK
Ensembl Gene ID:
ENSAPLG00000009451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009893
53098780 - 53166800
68021