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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53148496_53150386_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53148496 - 53150386
Intron Length:
1891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAATGAAC
5'SS Class:
major
3'SS Sequence:
TATCTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TAAATTATAAAT
Flanking Amino Acid:
EEQQEILSKFGKPELPRQPG
Intron Amino Acid Position:
740

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
66.2
39.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
83.2
0.75
0.7
81.7
29.8
Minor 5ss
33.1
-1.9
3.2
43.9
43.7
Minor BPS
48
-0
1.7
64.99
38.7

Associated Gene:

Gene:
GAK
Ensembl Gene ID:
ENSAPLG00000009451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009893
53098780 - 53166800
68021