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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53158514_53162232_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53158514 - 53162232
Intron Length:
3719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTCGTTATTT
Flanking Amino Acid:
DLANLGSGLPGSSMSGFSGS
Intron Amino Acid Position:
1083

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74
0.54
1
74.6
39.9
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
52.8
0.17
2.3
75.44
41.6

Associated Gene:

Gene:
GAK
Ensembl Gene ID:
ENSAPLG00000009451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009893
53098780 - 53166800
68021