Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53162446_53163575_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53162446 - 53163575

Intron Length:

1130

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTTTCATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

ATAACTTTAATG

Flanking Amino Acid:

EERGVRTPSFGQKPKVSAND

Intron Amino Acid Position:

1154

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

89.6

24.1

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

83.5

0.75

0.7

79.9

25.6

Minor 5ss

46.3

-0.4

2.8

64.1

41.5

Minor BPS

64.7

0.32

1.4

63.38

38.7

Associated Gene:

Gene:

GAK

Ensembl Gene ID:

ENSAPLG00000009451

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009893

53098780 - 53166800

68021